COOPER ST LOGIC SHOP ANNEX / A-04

Xenium Explorer Walkthrough

Screen capture of Xenium Explorer 2.0 moving through a tissue section — image channels, region selection, gene search and transcript-level inspection.

Xenium Explorer 2.0 · silent screen capture · 25 sec

The capture runs without narration. In order, it moves through:

  • Image channels — the morphology image under multi-channel display, with per-channel intensity thresholds and gamma, and the H&E image toggled in over the top.
  • Region selection — freehand and rectangular tools drawing a boundary around a structure, with the coordinates of a previous selection available to paste back in.
  • Gene search — the panel listing every gene in the assay against its count and expression value.
  • Transcript inspection — individual transcripts resolved at zoom, each one addressable for its ID, Q-score and position in the section.